Variant report

Variant	rs6826734
Chromosome Location	chr4:74575324-74575325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:74575239-74575502	GM12878	blood:	n/a	n/a
2	CCNT2	chr4:74575268-74575468	K562	blood:	n/a	n/a
3	SPI1	chr4:74575116-74575621	HL-60	blood:	n/a	n/a
4	EP300	chr4:74575195-74575363	K562	blood:	n/a	n/a
5	CEBPB	chr4:74575152-74575359	K562	blood:	n/a	chr4:74575230-74575243 chr4:74575166-74575177 chr4:74575166-74575179
6	MYC	chr4:74575245-74575395	K562	blood:	n/a	n/a
7	SPI1	chr4:74575152-74575489	HL-60	blood:	n/a	n/a
8	JUND	chr4:74575199-74575405	K562	blood:	n/a	n/a
9	ARID3A	chr4:74575237-74575382	K562	blood:	n/a	n/a
10	CUX1	chr4:74575166-74575465	K562	blood:	n/a	n/a
11	SPI1	chr4:74575238-74575450	K562	blood:	n/a	n/a
12	USF2	chr4:74575282-74575340	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74561984..74564157-chr4:74572990..74575349,2	K562	blood:
2	chr4:74572825..74575404-chr4:74599407..74602314,2	K562	blood:

Variant related genes	Relation type
ENSG00000228277	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4285054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6817222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74566800-74575400	Enhancers	HMEC	breast
2	chr4:74569200-74576400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:74569800-74576200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:74570600-74578600	Enhancers	K562	blood
5	chr4:74570600-74581400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:74572800-74575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:74572800-74576000	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:74573200-74576200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:74574200-74575600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:74574200-74575600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:74574200-74576200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:74574200-74578000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:74574400-74575600	Enhancers	Hela-S3	cervix
14	chr4:74574400-74575800	Enhancers	HUVEC	blood vessel
15	chr4:74574400-74576200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr4:74574400-74576200	Enhancers	NHEK	skin
17	chr4:74574400-74576400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr4:74574400-74577600	Weak transcription	Fetal Thymus	thymus
19	chr4:74574400-74577800	Weak transcription	Thymus	Thymus
20	chr4:74574400-74578200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:74574600-74577400	Weak transcription	Dnd41	blood
22	chr4:74574600-74583600	Weak transcription	NHDF-Ad	bronchial
23	chr4:74574600-74583800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:74574800-74579200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:74574800-74579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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