Variant report

Variant	rs6827031
Chromosome Location	chr4:121570039-121570040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10023476	1.00[JPT][hapmap]
rs10518373	0.90[AFR][1000 genomes]
rs13111861	0.97[AFR][1000 genomes]
rs13135789	0.90[AFR][1000 genomes]
rs13138888	0.90[AFR][1000 genomes]
rs1511310	1.00[JPT][hapmap]
rs17051204	0.87[AFR][1000 genomes]
rs17051233	1.00[JPT][hapmap]
rs6814313	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121569200-121570200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:121569600-121570200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:121569800-121570200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:121570000-121570400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:121570000-121570400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:121570000-121570400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:121570000-121577400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links