Variant report

Variant	rs6827613
Chromosome Location	chr4:74125990-74125991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:74123010-74126012	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr4:74122910-74126122	IMR90	lung:	n/a	n/a
3	POLR2A	chr4:74122469-74126057	GM12878	blood:	n/a	n/a
4	MXI1	chr4:74122089-74126209	IMR90	lung:	n/a	chr4:74122466-74122481
5	POLR2A	chr4:74122595-74126208	GM12891	blood:	n/a	n/a
6	CHD1	chr4:74125811-74126102	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZKSCAN1	chr4:74124752-74126078	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr4:74122932-74126185	GM12878	blood:	n/a	n/a
9	POLR2A	chr4:74123753-74126257	GM19099	blood:	n/a	n/a
10	POLR2A	chr4:74122824-74126026	K562	blood:	n/a	n/a
11	POLR2A	chr4:74123021-74126031	Raji	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:73968348..73971622-chr4:74123384..74126959,3	MCF-7	breast:
2	chr4:73929823..73938112-chr4:74120693..74129342,27	K562	blood:
3	chr4:73932413..73938405-chr4:74120693..74126649,20	K562	blood:
4	chr4:74086092..74089125-chr4:74123157..74126277,4	MCF-7	breast:
5	chr4:74087106..74090351-chr4:74123421..74126445,9	K562	blood:
6	chr4:73933853..73938156-chr4:74122325..74126609,11	MCF-7	breast:
7	chr4:73944384..73947318-chr4:74125814..74128243,2	MCF-7	breast:
8	chr4:74018332..74023301-chr4:74122420..74126136,8	MCF-7	breast:
9	chr4:73932730..73938383-chr4:74120374..74126369,19	MCF-7	breast:
10	chr4:73992225..73994426-chr4:74125151..74126753,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALB-1	chr4:74124504-74130555	NONHSAT096836

No data

Variant related genes	Relation type
ANKRD17	TF binding region
ENSG00000221639	TF binding region
ENSG00000163626	Chromatin interaction
ENSG00000132466	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7677651	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3350599	chr4:74122400-74142462	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74121600-74126000	Active TSS	Right Ventricle	heart
2	chr4:74122000-74126200	Active TSS	Aorta	Aorta
3	chr4:74122200-74126200	Active TSS	Psoas Muscle	Psoas
4	chr4:74122200-74126400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr4:74122200-74126400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:74122400-74126000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:74122400-74126000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:74122400-74126000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:74122400-74126000	Active TSS	Colonic Mucosa	Colon
10	chr4:74122400-74126200	Active TSS	NHLF	lung
11	chr4:74122400-74126600	Active TSS	GM12878-XiMat	blood
12	chr4:74122600-74126000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:74122600-74126400	Active TSS	Fetal Brain Male	brain
14	chr4:74122800-74126000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr4:74122800-74126000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:74122800-74126200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr4:74122800-74126600	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:74123000-74126000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:74123000-74126000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr4:74123000-74126000	Active TSS	Fetal Muscle Trunk	muscle
21	chr4:74123000-74126000	Active TSS	Left Ventricle	heart
22	chr4:74123000-74126000	Active TSS	HSMM	muscle
23	chr4:74123200-74126000	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr4:74124200-74127000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:74124400-74126600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:74125200-74126000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr4:74125200-74126000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:74125200-74126000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:74125200-74126000	Flanking Active TSS	Brain Angular Gyrus	brain
30	chr4:74125200-74126000	Active TSS	Brain Germinal Matrix	brain
31	chr4:74125200-74126000	Active TSS	Right Atrium	heart
32	chr4:74125200-74126200	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr4:74125200-74126200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:74125200-74126200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr4:74125400-74126000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr4:74125400-74126000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr4:74125400-74126000	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr4:74125400-74126000	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr4:74125400-74126000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr4:74125400-74126200	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr4:74125400-74126200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr4:74125400-74126200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr4:74125400-74126200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:74125400-74126200	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr4:74125400-74126200	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr4:74125400-74126200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr4:74125400-74126200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr4:74125600-74126000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
49	chr4:74125600-74126000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:74125600-74126000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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