Variant report

Variant	rs6827645
Chromosome Location	chr4:151455871-151455872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151454348..151457319-chr4:151460671..151464936,3	K562	blood:
2	chr4:151454348..151457319-chr4:151462077..151464936,2	K562	blood:
3	chr4:151450833..151453159-chr4:151453933..151457802,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH3D19-10	chr4:151455833-151456140	uc_147_-
2	lnc-MAB21L2-2	chr4:151455833-151456140	uc_147_+

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10013352	0.81[EUR][1000 genomes]
rs10021461	0.81[EUR][1000 genomes]
rs12498862	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12500337	0.84[ASN][1000 genomes]
rs12503093	0.84[ASN][1000 genomes]
rs12506612	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507785	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508149	0.84[ASN][1000 genomes]
rs12647325	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17589028	0.84[ASN][1000 genomes]
rs17589134	0.84[ASN][1000 genomes]
rs17589349	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979920	0.84[ASN][1000 genomes]
rs1995540	0.81[EUR][1000 genomes]
rs2036552	0.84[ASN][1000 genomes]
rs2360071	0.84[ASN][1000 genomes]
rs6812262	0.84[ASN][1000 genomes]
rs6817796	0.84[ASN][1000 genomes]
rs6831707	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6836012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839345	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6854612	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6855729	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9942218	0.81[EUR][1000 genomes]
rs998069	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151409000-151456600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:151422800-151474600	Weak transcription	Primary B cells from cord blood	blood
3	chr4:151440200-151472600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:151445000-151472600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:151452400-151459200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:151453200-151474600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:151453600-151462000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:151455200-151460800	Weak transcription	K562	blood
9	chr4:151455200-151473200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:151455800-151456000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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