Variant report

Variant	rs6828070
Chromosome Location	chr4:119588308-119588309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11724866	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11945703	0.92[ASN][1000 genomes]
rs12640223	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12646268	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12646298	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12648682	0.90[ASN][1000 genomes]
rs12648778	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13111664	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13115157	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13124091	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13146440	0.84[ASN][1000 genomes]
rs13146816	0.84[ASN][1000 genomes]
rs2029399	0.91[ASN][1000 genomes]
rs2046779	0.85[ASN][1000 genomes]
rs3087958	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34091082	0.86[ASN][1000 genomes]
rs34508500	0.86[ASN][1000 genomes]
rs35023705	0.92[ASN][1000 genomes]
rs35392662	0.84[ASN][1000 genomes]
rs35404779	0.88[ASN][1000 genomes]
rs35522890	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35613641	0.86[ASN][1000 genomes]
rs35952841	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs36023173	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3733517	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66500248	0.92[ASN][1000 genomes]
rs66942289	0.92[ASN][1000 genomes]
rs67151421	0.86[ASN][1000 genomes]
rs67989872	0.86[ASN][1000 genomes]
rs6813357	0.92[ASN][1000 genomes]
rs6814447	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6817790	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6818241	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6821350	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6831197	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6836005	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6837652	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6847706	0.83[ASN][1000 genomes]
rs6852706	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6855919	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6857285	0.86[ASN][1000 genomes]
rs71610228	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72679023	0.84[ASN][1000 genomes]
rs7653962	0.84[ASN][1000 genomes]
rs7692721	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7695602	0.84[ASN][1000 genomes]
rs7696543	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1816850	chr4:119561525-119591587	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv964089	chr4:119563981-119592460	Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv967845	chr4:119579279-119588647	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6828070	METTL14	cis	brain	BrainEAC
rs6828070	RP11-384K6.6	cis	Artery Tibial	GTEx
rs6828070	RP11-384K6.2	cis	Whole Blood	GTEx
rs6828070	RP11-384K6.2	cis	Artery Tibial	GTEx
rs6828070	RP11-384K6.6	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119588200-119588400	Enhancers	Liver	Liver

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