Variant report

Variant	rs6828340
Chromosome Location	chr4:99783494-99783495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11946627	0.81[AMR][1000 genomes]
rs6814029	0.90[AMR][1000 genomes]
rs6833074	0.88[YRI][hapmap];0.90[AMR][1000 genomes]
rs6834230	0.90[AMR][1000 genomes]
rs6856147	0.89[AMR][1000 genomes]
rs72893526	0.90[AMR][1000 genomes]
rs72893533	0.90[AMR][1000 genomes]
rs72893538	0.90[AMR][1000 genomes]
rs72893541	0.90[AMR][1000 genomes]
rs72893544	0.90[AMR][1000 genomes]
rs72893547	0.90[AMR][1000 genomes]
rs72905036	0.90[AMR][1000 genomes]
rs72905048	0.90[AMR][1000 genomes]
rs72905053	0.90[AMR][1000 genomes]
rs72905075	0.90[AMR][1000 genomes]
rs7693840	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99782400-99783600	Enhancers	Stomach Mucosa	stomach
2	chr4:99782800-99784000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links