Variant report

Variant	rs682886
Chromosome Location	chr12:63284138-63284139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63282634..63285463-chr12:63286553..63289663,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1088467	1.00[ASN][1000 genomes]
rs11829524	1.00[EUR][1000 genomes]
rs12099667	1.00[ASN][1000 genomes]
rs1666912	1.00[EUR][1000 genomes]
rs56654926	1.00[ASN][1000 genomes]
rs574678	1.00[ASN][1000 genomes]
rs619480	1.00[ASN][1000 genomes]
rs654228	1.00[ASN][1000 genomes]
rs668823	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680680	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681594	1.00[ASN][1000 genomes]
rs682414	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv899161	chr12:63275017-63311148	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv899162	chr12:63279750-63334242	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63268000-63285000	Weak transcription	Fetal Intestine Large	intestine
2	chr12:63271400-63287200	Weak transcription	Aorta	Aorta
3	chr12:63271600-63294400	Weak transcription	Ovary	ovary
4	chr12:63275400-63287000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:63276400-63286600	Weak transcription	Pancreas	Pancrea
6	chr12:63277000-63285600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:63277400-63285800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:63279400-63286600	Weak transcription	Fetal Intestine Small	intestine
9	chr12:63279400-63289200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:63280600-63284200	Enhancers	Brain Substantia Nigra	brain
11	chr12:63281000-63293000	Weak transcription	Left Ventricle	heart
12	chr12:63281200-63285400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:63281200-63293600	Weak transcription	Gastric	stomach
14	chr12:63281400-63286000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:63281800-63285200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:63282000-63285000	Enhancers	HepG2	liver
17	chr12:63282000-63285600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:63282200-63295400	Weak transcription	Lung	lung
19	chr12:63283000-63285000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:63283000-63285600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:63283400-63284200	Enhancers	Brain Angular Gyrus	brain
22	chr12:63283800-63285400	Weak transcription	Brain Anterior Caudate	brain
23	chr12:63284000-63284200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:63284000-63284200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr12:63284000-63284200	Enhancers	Duodenum Mucosa	Duodenum
26	chr12:63284000-63285800	Enhancers	Brain Hippocampus Middle	brain

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