Variant report

Variant	rs6828909
Chromosome Location	chr4:107209759-107209760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11097925	1.00[YRI][hapmap]
rs12509865	1.00[YRI][hapmap]
rs12512877	1.00[YRI][hapmap]
rs12512903	1.00[YRI][hapmap]
rs12639869	1.00[YRI][hapmap]
rs12641037	1.00[YRI][hapmap]
rs12642059	1.00[YRI][hapmap]
rs12644259	1.00[YRI][hapmap]
rs17273093	1.00[YRI][hapmap]
rs17274248	1.00[YRI][hapmap]
rs17333732	1.00[YRI][hapmap]
rs3775090	1.00[YRI][hapmap]
rs4429790	1.00[YRI][hapmap]
rs59016833	0.86[AFR][1000 genomes]
rs6533243	1.00[YRI][hapmap]
rs6816698	1.00[YRI][hapmap]
rs6843870	1.00[YRI][hapmap]
rs7665946	1.00[YRI][hapmap]
rs7666081	1.00[AFR][1000 genomes]
rs7699768	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879705	chr4:107179126-107212966	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:107177800-107211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:107177800-107215200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:107178000-107211800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:107178000-107211800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:107178000-107211800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:107178000-107211800	Weak transcription	Fetal Stomach	stomach
10	chr4:107178000-107211800	Weak transcription	Left Ventricle	heart
11	chr4:107178000-107211800	Weak transcription	Ovary	ovary
12	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
14	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
15	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
16	chr4:107178200-107211600	Weak transcription	Placenta	Placenta
17	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:107179000-107211400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:107186000-107211800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:107186200-107212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:107187600-107215200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:107192400-107215200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:107194200-107211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:107194400-107221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:107194800-107227600	Weak transcription	Brain Angular Gyrus	brain
26	chr4:107195400-107213000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:107195600-107214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:107196000-107211800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:107198800-107235600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:107199200-107211800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:107201400-107227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:107202200-107219400	Weak transcription	Fetal Brain Male	brain
33	chr4:107202800-107236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:107203200-107212200	Weak transcription	Fetal Lung	lung
35	chr4:107204000-107235800	Weak transcription	Psoas Muscle	Psoas
36	chr4:107204000-107236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:107204200-107212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:107204200-107220400	Weak transcription	Fetal Heart	heart
39	chr4:107205600-107236000	Weak transcription	Brain Anterior Caudate	brain
40	chr4:107205800-107211800	Weak transcription	Thymus	Thymus
41	chr4:107205800-107212400	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:107205800-107213000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:107205800-107227600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:107206000-107212600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:107206400-107211800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:107206400-107211800	Weak transcription	Gastric	stomach
47	chr4:107206400-107211800	Weak transcription	Dnd41	blood
48	chr4:107206400-107215200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:107206600-107215200	Weak transcription	Brain Germinal Matrix	brain
50	chr4:107206800-107211800	Weak transcription	Duodenum Mucosa	Duodenum

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