Variant report

Variant	rs6831088
Chromosome Location	chr4:20257769-20257770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20252097..20254985-chr4:20256141..20260392,5	MCF-7	breast:
2	chr4:20240508..20242513-chr4:20257215..20258774,2	K562	blood:
3	chr4:20252458..20255013-chr4:20255238..20258452,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145147	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12641426	0.82[EUR][1000 genomes]
rs13142886	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323067	0.98[EUR][1000 genomes]
rs1815266	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1865759	0.93[EUR][1000 genomes]
rs1923839	0.97[EUR][1000 genomes]
rs2322461	0.98[EUR][1000 genomes]
rs7664347	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878736	chr4:20233035-20279858	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878737	chr4:20233035-20282334	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3445634	chr4:20257536-20257842	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20252200-20258200	Active TSS	NHDF-Ad	bronchial
2	chr4:20252600-20257800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:20252800-20258600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:20253000-20258000	Active TSS	Placenta Amnion	Placenta Amnion
5	chr4:20253000-20259000	Active TSS	Aorta	Aorta
6	chr4:20253800-20258400	Flanking Active TSS	HUVEC	blood vessel
7	chr4:20254200-20259400	Transcr. at gene 5' and 3'	Fetal Lung	lung
8	chr4:20254800-20258000	Active TSS	Right Atrium	heart
9	chr4:20255400-20257800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr4:20255800-20258000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:20256400-20258000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr4:20256400-20259800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:20256600-20257800	Active TSS	Placenta	Placenta
14	chr4:20256600-20258400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:20256600-20258600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr4:20256800-20258800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:20257000-20257800	Active TSS	Brain Anterior Caudate	brain
18	chr4:20257000-20257800	Active TSS	Rectal Smooth Muscle	rectum
19	chr4:20257000-20258200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
20	chr4:20257000-20258400	Active TSS	NHLF	lung
21	chr4:20257200-20257800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr4:20257200-20257800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr4:20257200-20257800	Bivalent/Poised TSS	Fetal Brain Male	brain
24	chr4:20257200-20257800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr4:20257200-20258000	Active TSS	Adipose Nuclei	Adipose
26	chr4:20257200-20258200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:20257200-20258200	Active TSS	Fetal Stomach	stomach
28	chr4:20257200-20258400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:20257200-20259200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:20257400-20257800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr4:20257400-20257800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:20257400-20258000	Flanking Active TSS	NHEK	skin
33	chr4:20257400-20258200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:20257400-20258200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:20257400-20258400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:20257400-20258600	Flanking Active TSS	Osteobl	bone
37	chr4:20257400-20259200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:20257600-20257800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr4:20257600-20257800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
40	chr4:20257600-20257800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
41	chr4:20257600-20257800	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr4:20257600-20257800	Flanking Active TSS	Colon Smooth Muscle	Colon
43	chr4:20257600-20257800	Bivalent Enhancer	Fetal Brain Female	brain
44	chr4:20257600-20257800	Enhancers	Fetal Kidney	kidney
45	chr4:20257600-20257800	Enhancers	Hela-S3	cervix
46	chr4:20257600-20258000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
47	chr4:20257600-20258000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:20257600-20258000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:20257600-20258000	Enhancers	NH-A	brain
50	chr4:20257600-20259600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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