Variant report

Variant	rs6831101
Chromosome Location	chr4:106382735-106382736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106374527..106376127-chr4:106381017..106383755,2	K562	blood:
2	chr4:106374627..106376374-chr4:106382101..106383755,2	K562	blood:
3	chr19:14628856..14629503-chr4:106382544..106383406,2	HCT-116	colon:
4	chr4:106382637..106384187-chr4:106394587..106397497,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138777	Chromatin interaction
ENSG00000132002	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10488941	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933675	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17035634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398075	0.95[ASN][1000 genomes]
rs3733609	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106327200-106389200	Weak transcription	Small Intestine	intestine
2	chr4:106327200-106390600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:106336800-106387800	Weak transcription	NHLF	lung
4	chr4:106340200-106387800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:106347600-106392800	Weak transcription	Colonic Mucosa	Colon
6	chr4:106348000-106388000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:106348200-106387800	Weak transcription	Lung	lung
8	chr4:106348200-106393000	Weak transcription	Thymus	Thymus
9	chr4:106348400-106384200	Weak transcription	Fetal Stomach	stomach
10	chr4:106348600-106384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:106355400-106393200	Weak transcription	Esophagus	oesophagus
12	chr4:106357200-106387600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:106357200-106392600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:106357600-106392200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:106359000-106387600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:106361800-106387800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:106362200-106392600	Weak transcription	A549	lung
18	chr4:106363800-106390200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:106364400-106384200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:106364600-106382800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:106364600-106392000	Weak transcription	Brain Anterior Caudate	brain
22	chr4:106364600-106392600	Weak transcription	Fetal Kidney	kidney
23	chr4:106365800-106387600	Weak transcription	Placenta	Placenta
24	chr4:106366000-106384600	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:106366000-106392400	Weak transcription	Osteobl	bone
26	chr4:106366000-106392600	Weak transcription	Psoas Muscle	Psoas
27	chr4:106366600-106392200	Weak transcription	Liver	Liver
28	chr4:106366600-106392200	Weak transcription	HepG2	liver
29	chr4:106366600-106392600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:106366800-106393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:106367800-106384600	Weak transcription	Fetal Intestine Large	intestine
32	chr4:106368200-106392000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:106369400-106388800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:106369600-106388000	Weak transcription	Hela-S3	cervix
35	chr4:106370000-106392600	Weak transcription	HUVEC	blood vessel
36	chr4:106372800-106387200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:106373200-106387600	Weak transcription	Fetal Thymus	thymus
38	chr4:106373200-106392600	Weak transcription	NH-A	brain
39	chr4:106373400-106390600	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:106373400-106392200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:106374000-106387800	Weak transcription	Ovary	ovary
42	chr4:106374000-106392400	Weak transcription	NHDF-Ad	bronchial
43	chr4:106374000-106393000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:106374600-106384200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr4:106374600-106392400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:106374600-106392600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:106375000-106387400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:106375000-106387400	Weak transcription	Adipose Nuclei	Adipose
49	chr4:106375000-106391400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:106375400-106387000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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