Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125633390..125635842-chr4:125801059..125802872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10022194	0.82[ASN][1000 genomes]
rs10023830	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1120767	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12644910	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1506548	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1531857	0.86[EUR][1000 genomes]
rs1971349	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2170746	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2390741	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2390766	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs313993	1.00[AFR][1000 genomes]
rs4834008	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4834009	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7656356	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7657807	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7657969	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7658320	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7662742	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7664577	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7686429	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7698052	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9307556	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9685726	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs993853	0.93[EUR][1000 genomes]
rs993854	0.93[EUR][1000 genomes]
rs9993402	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125802200-125802600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:125802400-125802800	Enhancers	Fetal Lung	lung

Quick Search: