Variant report

Variant	rs6831838
Chromosome Location	chr4:147576177-147576178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147569955..147572256-chr4:147575383..147578342,2	K562	blood:
2	chr4:147569383..147571342-chr4:147575306..147577219,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1504360	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830107	chr4:147452434-147635720	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv880238	chr4:147469559-147617963	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2753640	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2754145	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147575400-147576400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:147575400-147576600	Bivalent/Poised TSS	NHDF-Ad	bronchial
3	chr4:147575400-147576800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:147575400-147576800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:147575400-147576800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
6	chr4:147575400-147576800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
7	chr4:147575400-147576800	Active TSS	Right Atrium	heart
8	chr4:147575400-147576800	Bivalent/Poised TSS	NH-A	brain
9	chr4:147575400-147577000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
10	chr4:147575400-147577000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
11	chr4:147575400-147577000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
12	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
14	chr4:147575600-147576200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
16	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
17	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
19	chr4:147575600-147576200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
20	chr4:147575600-147576200	Active TSS	Rectal Smooth Muscle	rectum
21	chr4:147575600-147576200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
22	chr4:147575600-147576600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:147575600-147576600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
24	chr4:147575600-147576600	Active TSS	Colonic Mucosa	Colon
25	chr4:147575600-147576600	Bivalent/Poised TSS	A549	lung
26	chr4:147575600-147576800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:147575600-147576800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:147575600-147576800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr4:147575600-147576800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:147575600-147576800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
31	chr4:147575600-147576800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
32	chr4:147575600-147576800	Active TSS	Right Ventricle	heart
33	chr4:147575600-147576800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
34	chr4:147575600-147576800	Bivalent/Poised TSS	NHLF	lung
35	chr4:147575600-147576800	Bivalent/Poised TSS	Osteobl	bone
36	chr4:147575600-147577000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
37	chr4:147575600-147577000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:147575600-147577000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
39	chr4:147575600-147577200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:147575800-147576200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
41	chr4:147575800-147576200	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr4:147575800-147576200	Flanking Bivalent TSS/Enh	Liver	Liver
43	chr4:147575800-147576200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
44	chr4:147575800-147576200	Bivalent/Poised TSS	Fetal Stomach	stomach
45	chr4:147575800-147576200	Bivalent Enhancer	Small Intestine	intestine
46	chr4:147575800-147576400	Active TSS	Aorta	Aorta
47	chr4:147575800-147576400	Bivalent/Poised TSS	HSMMtube	muscle
48	chr4:147575800-147576600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:147575800-147576600	Bivalent Enhancer	Fetal Brain Male	brain
50	chr4:147575800-147576600	Bivalent/Poised TSS	Fetal Brain Female	brain

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