Variant report

Variant	rs6833401
Chromosome Location	chr4:90012837-90012838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89994149..89996118-chr4:90010603..90012970,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10009665	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516826	0.82[JPT][hapmap]
rs10516828	0.82[JPT][hapmap]
rs11097214	0.99[ASN][1000 genomes]
rs11097215	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12509747	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641645	0.93[ASN][1000 genomes]
rs12643834	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644568	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12646713	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12646734	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13124770	0.99[ASN][1000 genomes]
rs13148714	0.93[ASN][1000 genomes]
rs1355835	0.93[ASN][1000 genomes]
rs1355838	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458558	0.83[JPT][hapmap]
rs1513807	0.87[CEU][hapmap]
rs1513821	0.92[ASN][1000 genomes]
rs1533291	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs17015025	0.82[JPT][hapmap]
rs1708661	0.88[JPT][hapmap]
rs1708674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1708678	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs1708684	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs17770293	0.82[JPT][hapmap]
rs1795721	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs1795731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1795732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1795733	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs2037036	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2037037	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280099	0.82[JPT][hapmap]
rs2458545	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs2458546	0.85[ASN][1000 genomes]
rs2458547	0.85[ASN][1000 genomes]
rs2464516	0.84[ASN][1000 genomes]
rs2464517	0.92[ASN][1000 genomes]
rs2670624	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs2670625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2670626	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs2670629	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs2670630	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs2704597	0.92[ASN][1000 genomes]
rs2869987	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2869988	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2869990	0.93[ASN][1000 genomes]
rs4634189	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4693221	0.89[ASN][1000 genomes]
rs4693983	0.95[ASN][1000 genomes]
rs6532094	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs6532099	0.87[ASN][1000 genomes]
rs6532109	0.91[ASN][1000 genomes]
rs6532112	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822256	0.82[JPT][hapmap]
rs6833424	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6833576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835031	0.95[ASN][1000 genomes]
rs6844490	0.88[JPT][hapmap]
rs6854285	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72665891	0.92[ASN][1000 genomes]
rs7440590	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs756175	0.95[ASN][1000 genomes]
rs756176	0.95[ASN][1000 genomes]
rs7691983	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696844	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8582	0.82[JPT][hapmap]
rs938264	0.95[ASN][1000 genomes]
rs938268	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9991151	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90012400-90013000	Enhancers	HepG2	liver
2	chr4:90012600-90013000	Enhancers	Duodenum Mucosa	Duodenum

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