Variant report
| Variant | rs6833742 |
|---|---|
| Chromosome Location | chr4:106428563-106428564 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168769 | Chromatin interaction |
| ENSG00000138777 | Chromatin interaction |
| ENSG00000138785 | Chromatin interaction |
| ENSG00000138780 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs13787 | 1.00[YRI][hapmap] |
| rs1490593 | 1.00[YRI][hapmap] |
| rs1490595 | 1.00[YRI][hapmap] |
| rs1490607 | 1.00[YRI][hapmap] |
| rs1490608 | 1.00[YRI][hapmap] |
| rs2522545 | 1.00[YRI][hapmap] |
| rs2636708 | 1.00[YRI][hapmap] |
| rs2636720 | 1.00[YRI][hapmap] |
| rs2636726 | 1.00[YRI][hapmap] |
| rs2636746 | 1.00[YRI][hapmap] |
| rs2636748 | 1.00[YRI][hapmap] |
| rs2636749 | 1.00[YRI][hapmap] |
| rs2636751 | 1.00[YRI][hapmap] |
| rs2713841 | 1.00[YRI][hapmap] |
| rs2713852 | 1.00[YRI][hapmap] |
| rs2713853 | 1.00[YRI][hapmap] |
| rs2713854 | 1.00[YRI][hapmap] |
| rs2713859 | 1.00[YRI][hapmap] |
| rs2713861 | 1.00[YRI][hapmap] |
| rs2726462 | 1.00[YRI][hapmap] |
| rs2726472 | 1.00[YRI][hapmap] |
| rs2726499 | 1.00[YRI][hapmap] |
| rs2726527 | 0.84[JPT][hapmap] |
| rs2726528 | 0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs28478829 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2866884 | 1.00[YRI][hapmap] |
| rs7673368 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879699 | chr4:106212562-106698892 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002228 | chr4:106346206-106433381 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6833742 | PPA2 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
