Variant report

Variant	rs6835173
Chromosome Location	chr4:144291175-144291176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144290996..144292995-chr4:144295055..144297084,2	MCF-7	breast:
2	chr4:144284857..144287398-chr4:144288484..144291385,2	K562	blood:
3	chr4:144289833..144292177-chr4:144294492..144296058,2	K562	blood:
4	chr4:144289833..144291469-chr4:144294402..144296058,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28925888	1.00[AFR][1000 genomes]
rs28989191	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018566	chr4:144284927-144298930	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv437941	chr4:144285683-144295952	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv1021714	chr4:144288438-144299191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1033347	chr4:144288438-144299563	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144272800-144299800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144277400-144296800	Weak transcription	HSMMtube	muscle
3	chr4:144281200-144296800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:144281400-144296800	Weak transcription	Fetal Kidney	kidney
5	chr4:144281800-144293400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:144282000-144291200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:144283000-144291200	Weak transcription	Ovary	ovary
8	chr4:144283000-144293400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:144283000-144295400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:144283000-144302200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:144283200-144293400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:144284000-144293600	Weak transcription	Spleen	Spleen
13	chr4:144284000-144296600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:144284000-144296600	Weak transcription	Fetal Thymus	thymus
15	chr4:144284200-144295600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:144284400-144299400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:144284600-144291200	Weak transcription	Fetal Intestine Small	intestine
18	chr4:144284600-144295200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:144284600-144295200	Weak transcription	K562	blood
20	chr4:144284800-144295600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:144286000-144291200	Weak transcription	Aorta	Aorta
22	chr4:144286000-144293400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:144286000-144294600	Weak transcription	Placenta	Placenta
24	chr4:144286000-144295800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:144286000-144298200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:144287400-144294400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:144288200-144296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:144290000-144291600	Enhancers	Brain Angular Gyrus	brain
29	chr4:144290000-144291600	Strong transcription	Fetal Stomach	stomach
30	chr4:144290000-144291600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr4:144290400-144291400	Enhancers	Stomach Mucosa	stomach
32	chr4:144290400-144291600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr4:144290600-144291400	Enhancers	Primary hematopoietic stem cells	blood
34	chr4:144290600-144291400	Enhancers	Brain Hippocampus Middle	brain
35	chr4:144290600-144291400	Enhancers	HUVEC	blood vessel
36	chr4:144290600-144291400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr4:144290600-144291600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr4:144290600-144291600	Enhancers	Primary B cells from peripheral blood	blood
39	chr4:144290600-144291600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr4:144290600-144291600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:144290600-144291600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:144290600-144291600	Enhancers	Brain Anterior Caudate	brain
43	chr4:144290600-144291600	Enhancers	Brain Substantia Nigra	brain
44	chr4:144290600-144291600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr4:144290600-144291600	Enhancers	Left Ventricle	heart
46	chr4:144290600-144291600	Enhancers	Lung	lung
47	chr4:144290600-144291600	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr4:144290600-144291600	Enhancers	Right Atrium	heart
49	chr4:144290600-144291600	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr4:144290600-144291600	Enhancers	Skeletal Muscle Female	skeletal muscle

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