Variant report

Variant	rs6835412
Chromosome Location	chr4:166553356-166553357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166552860..166555630-chr4:166591074..166593334,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28803504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28862985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs922099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166551800-166553600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:166551800-166553800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:166551800-166554000	Enhancers	HMEC	breast
5	chr4:166552000-166553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:166552000-166553600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:166552000-166553600	Enhancers	Fetal Heart	heart
8	chr4:166552000-166554000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:166552200-166554000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:166552400-166553400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:166552400-166554000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:166552600-166553400	Enhancers	Fetal Thymus	thymus
13	chr4:166552600-166553600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:166552600-166554000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:166552800-166553400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:166552800-166553400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:166552800-166554000	Enhancers	Fetal Stomach	stomach
18	chr4:166553000-166553400	Enhancers	Fetal Brain Female	brain
19	chr4:166553000-166553400	Enhancers	HSMMtube	muscle
20	chr4:166553000-166553600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:166553200-166553400	Enhancers	Right Atrium	heart
22	chr4:166553200-166553400	Flanking Active TSS	NHEK	skin
23	chr4:166553200-166553600	Enhancers	Rectal Smooth Muscle	rectum
24	chr4:166553200-166554000	Enhancers	Psoas Muscle	Psoas

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