Variant report

Variant	rs6835719
Chromosome Location	chr4:111063990-111063991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17440837	0.86[EUR][1000 genomes]
rs17512455	0.86[EUR][1000 genomes]
rs28493020	0.86[EUR][1000 genomes]
rs73841838	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:111040400-111066800	Weak transcription	Esophagus	oesophagus
5	chr4:111041800-111070600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:111042000-111080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:111042000-111084200	Weak transcription	NHLF	lung
8	chr4:111042800-111065200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:111049600-111067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:111050200-111086600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:111052600-111067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:111053200-111075200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:111054000-111069000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:111054000-111069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:111054800-111079400	Weak transcription	HMEC	breast
16	chr4:111056800-111070000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:111056800-111080200	Weak transcription	NHDF-Ad	bronchial
18	chr4:111057000-111065800	Weak transcription	Dnd41	blood
19	chr4:111057000-111070400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:111057000-111070400	Weak transcription	NHEK	skin
21	chr4:111057000-111077000	Weak transcription	Osteobl	bone
22	chr4:111057200-111082600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:111058000-111067000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:111060800-111064600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:111061200-111066400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:111061200-111067200	Weak transcription	A549	lung
27	chr4:111061200-111080000	Weak transcription	HSMM	muscle
28	chr4:111061200-111084000	Weak transcription	Small Intestine	intestine
29	chr4:111061400-111066000	Weak transcription	Stomach Mucosa	stomach
30	chr4:111061400-111066000	Weak transcription	K562	blood
31	chr4:111061400-111072600	Weak transcription	Fetal Intestine Small	intestine
32	chr4:111061400-111075800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:111061600-111064200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:111061600-111067800	Weak transcription	Liver	Liver
35	chr4:111061600-111077000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:111061600-111086600	Weak transcription	Fetal Intestine Large	intestine
37	chr4:111061800-111067200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:111062200-111065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:111062600-111067000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:111063400-111064000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:111063600-111064200	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr4:111063600-111064400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:111063600-111064400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:111063600-111064400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:111063600-111064400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:111063800-111064400	Strong transcription	HepG2	liver
47	chr4:111063800-111064800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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