Variant report

Variant	rs6835988
Chromosome Location	chr4:95387877-95387878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95386864..95390124-chr4:95470356..95473538,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10516949	1.00[AMR][1000 genomes]
rs11931316	1.00[AMR][1000 genomes]
rs6813105	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6815474	1.00[AMR][1000 genomes]
rs6835329	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6845278	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654062	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95374200-95388600	Weak transcription	Gastric	stomach
2	chr4:95374200-95389200	Weak transcription	Lung	lung
3	chr4:95374200-95395400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:95374200-95400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:95374600-95388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95374800-95398200	Weak transcription	Esophagus	oesophagus
7	chr4:95375000-95440200	Weak transcription	Primary T cells from cord blood	blood
8	chr4:95375800-95401600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:95376600-95392000	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:95378800-95391200	Weak transcription	Placenta	Placenta
11	chr4:95379200-95389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:95379200-95389600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:95379200-95391000	Enhancers	Liver	Liver
14	chr4:95379200-95398400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:95380200-95393400	Weak transcription	HSMMtube	muscle
16	chr4:95380600-95394600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:95381000-95388200	Weak transcription	Stomach Mucosa	stomach
18	chr4:95381200-95389400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:95381200-95391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:95381200-95393400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:95381600-95393000	Weak transcription	NH-A	brain
22	chr4:95381800-95390000	Weak transcription	K562	blood
23	chr4:95382600-95389400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:95382600-95390200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:95383000-95395800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:95383000-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:95383000-95396000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:95384200-95389600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:95384200-95393600	Weak transcription	Hela-S3	cervix
30	chr4:95384800-95389800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:95385000-95388400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:95385000-95388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:95385000-95388800	Weak transcription	NHEK	skin
34	chr4:95385000-95389200	Weak transcription	HMEC	breast
35	chr4:95385200-95390400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:95385600-95389400	Weak transcription	Ovary	ovary
37	chr4:95385800-95389400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:95386000-95388800	Weak transcription	HSMM	muscle
39	chr4:95386000-95390000	Weak transcription	HUVEC	blood vessel
40	chr4:95386000-95391400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:95386200-95389200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr4:95386600-95388600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:95386600-95390800	Enhancers	Fetal Heart	heart
44	chr4:95386600-95390800	Enhancers	HepG2	liver
45	chr4:95386800-95389800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:95387000-95388000	Enhancers	NHDF-Ad	bronchial
47	chr4:95387000-95388800	Enhancers	Osteobl	bone
48	chr4:95387200-95388400	Enhancers	Fetal Intestine Large	intestine
49	chr4:95387400-95388600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:95387400-95388800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links