Variant report

Variant	rs6836361
Chromosome Location	chr4:119624612-119624613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119614414..119617132-chr4:119621760..119624725,2	K562	blood:
2	chr4:119606397..119608981-chr4:119623565..119625809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145388	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6836261	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607000-119644800	Weak transcription	Small Intestine	intestine
2	chr4:119607200-119659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:119607800-119625600	Weak transcription	Aorta	Aorta
4	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:119608000-119645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:119608600-119635200	Strong transcription	Fetal Thymus	thymus
7	chr4:119608600-119635800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:119608600-119674000	Weak transcription	Stomach Mucosa	stomach
9	chr4:119608800-119625400	Weak transcription	HSMMtube	muscle
10	chr4:119608800-119635000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:119609000-119628200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:119609000-119633200	Strong transcription	Placenta	Placenta
13	chr4:119609000-119633400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:119609000-119633400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:119609000-119633800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:119609000-119634400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:119609000-119634800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:119609000-119635000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:119609000-119635000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr4:119609000-119636000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:119609000-119636200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr4:119609200-119633400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:119609200-119634400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr4:119609200-119634800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:119609200-119635600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:119609200-119635600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:119609200-119635800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:119609200-119636200	Strong transcription	Adipose Nuclei	Adipose
29	chr4:119609200-119648600	Weak transcription	Fetal Heart	heart
30	chr4:119609400-119633400	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr4:119609400-119635600	Strong transcription	Dnd41	blood
32	chr4:119610200-119628000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:119610400-119628400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:119610400-119628600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:119611600-119625400	Weak transcription	Ovary	ovary
36	chr4:119611600-119625600	Weak transcription	Fetal Brain Male	brain
37	chr4:119611800-119625600	Weak transcription	Lung	lung
38	chr4:119611800-119625600	Weak transcription	Pancreas	Pancrea
39	chr4:119612000-119628000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:119613000-119634400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:119614000-119627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:119614200-119625400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr4:119614200-119625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:119614400-119625400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:119615400-119633200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:119615600-119628400	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:119615600-119633200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:119616200-119625600	Weak transcription	Psoas Muscle	Psoas
49	chr4:119616600-119625600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:119616600-119626000	Weak transcription	H9 Cell Line	embryonic stem cell

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