Variant report

Variant	rs6836560
Chromosome Location	chr4:76254677-76254678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1493716	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000473	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17000489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17000492	1.00[CHB][hapmap]
rs1873969	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56748509	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61030062	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6813753	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820978	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6823575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852914	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72858111	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858116	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695205	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999220	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv998511	chr4:76184807-76398377	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2763368	chr4:76190070-76387413	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv461557	chr4:76212995-76363477	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv594688	chr4:76212995-76363477	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76249600-76255000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:76251200-76256200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:76252000-76256400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:76252400-76256600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:76253600-76256200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:76253800-76256200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:76254200-76256000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:76254400-76256200	Weak transcription	Muscle Satellite Cultured Cells	--

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