Variant report

Variant	rs6837153
Chromosome Location	chr4:144400351-144400352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008867	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10084783	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725272	0.83[ASN][1000 genomes]
rs11735967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933502	1.00[JPT][hapmap]
rs13114896	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1397529	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs1397530	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017801	0.80[GIH][hapmap]
rs28925939	0.83[ASN][1000 genomes]
rs3795246	1.00[JPT][hapmap]
rs7696619	0.80[GIH][hapmap];1.00[JPT][hapmap]
rs7698825	0.82[GIH][hapmap]
rs9995486	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757960	chr4:144348293-145131592	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2759288	chr4:144348293-145131592	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv830103	chr4:144393398-144553045	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144376800-144410000	Weak transcription	Pancreas	Pancrea
2	chr4:144382800-144400600	Weak transcription	Esophagus	oesophagus
3	chr4:144382800-144410200	Weak transcription	Gastric	stomach
4	chr4:144383000-144405800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:144384200-144400600	Weak transcription	Right Ventricle	heart
6	chr4:144384200-144409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:144390400-144401000	Weak transcription	Aorta	Aorta
8	chr4:144391000-144401800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:144392000-144400800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:144392200-144406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:144393600-144409200	Weak transcription	Placenta	Placenta
12	chr4:144394000-144400400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:144394800-144402200	Weak transcription	Brain Angular Gyrus	brain
14	chr4:144395000-144401400	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:144395200-144400800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:144395200-144404000	Weak transcription	Liver	Liver
17	chr4:144395600-144400600	Weak transcription	Primary B cells from cord blood	blood
18	chr4:144397400-144400600	Weak transcription	Left Ventricle	heart
19	chr4:144397400-144410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:144397600-144401400	Weak transcription	Brain Substantia Nigra	brain
21	chr4:144398600-144400800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:144399000-144403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:144399000-144406000	Weak transcription	Fetal Lung	lung

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