Variant report

Variant	rs6837328
Chromosome Location	chr4:99388927-99388928
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99388796..99389323-chr4:99977422..99977984,2	K562	blood:
2	chr4:99388436..99389361-chr4:99666672..99667178,2	MCF-7	breast:
3	chr4:99388707..99389636-chr4:99749659..99750550,4	MCF-7	breast:
4	chr4:99071303..99072113-chr4:99388789..99389313,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12508978	0.85[AFR][1000 genomes]
rs9884594	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99388000-99390200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99388400-99389400	Flanking Active TSS	Brain Cingulate Gyrus	brain
3	chr4:99388400-99389400	Enhancers	Esophagus	oesophagus
4	chr4:99388400-99389600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:99388600-99389000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:99388600-99389000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:99388600-99389000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:99388600-99389200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr4:99388600-99389200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:99388600-99389200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:99388600-99389200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr4:99388600-99389400	Enhancers	Primary B cells from peripheral blood	blood
13	chr4:99388600-99389400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr4:99388600-99389400	Flanking Active TSS	Fetal Muscle Trunk	muscle
15	chr4:99388600-99389400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr4:99388600-99389400	Active TSS	Stomach Smooth Muscle	stomach
17	chr4:99388600-99389400	Active TSS	A549	lung
18	chr4:99388600-99389400	Enhancers	HSMM	muscle
19	chr4:99388600-99389600	Enhancers	Placenta	Placenta
20	chr4:99388600-99389800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:99388600-99390200	Enhancers	Stomach Mucosa	stomach
22	chr4:99388800-99389000	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr4:99388800-99389000	Active TSS	Primary B cells from cord blood	blood
24	chr4:99388800-99389000	Active TSS	Primary T cells from cord blood	blood
25	chr4:99388800-99389000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:99388800-99389000	Active TSS	Pancreas	Pancrea
27	chr4:99388800-99389000	Active TSS	Thymus	Thymus
28	chr4:99388800-99389000	Active TSS	Monocytes-CD14+_RO01746	blood
29	chr4:99388800-99389200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr4:99388800-99389200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr4:99388800-99389200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:99388800-99389200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:99388800-99389200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:99388800-99389200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:99388800-99389200	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr4:99388800-99389200	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr4:99388800-99389200	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr4:99388800-99389200	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr4:99388800-99389200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:99388800-99389200	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr4:99388800-99389200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr4:99388800-99389200	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr4:99388800-99389200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr4:99388800-99389200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:99388800-99389200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr4:99388800-99389200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:99388800-99389200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr4:99388800-99389200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:99388800-99389200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr4:99388800-99389200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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