Variant report

Variant	rs6837395
Chromosome Location	chr4:21131950-21131951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10011670	0.93[CEU][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap]
rs10025289	0.88[AMR][1000 genomes]
rs10033700	0.94[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.94[YRI][hapmap]
rs11937186	0.95[CEU][hapmap]
rs12647089	0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs13110687	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1368642	0.94[ASW][hapmap];0.85[CEU][hapmap];0.81[CHD][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap]
rs1433477	0.94[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.94[YRI][hapmap]
rs1433483	0.88[AMR][1000 genomes]
rs1433484	0.88[AMR][1000 genomes]
rs1433485	0.88[AMR][1000 genomes]
rs1433486	0.88[AMR][1000 genomes]
rs1433487	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1433489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1433490	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433491	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17513440	0.85[CEU][hapmap];0.81[CHD][hapmap]
rs2043383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043385	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs28684660	0.88[AMR][1000 genomes]
rs28713553	0.88[AMR][1000 genomes]
rs2874890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28755915	0.88[AMR][1000 genomes]
rs4697207	0.93[CEU][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap];0.88[AMR][1000 genomes]
rs6448022	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6448029	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6826894	0.87[AFR][1000 genomes]
rs730349	0.85[CEU][hapmap];0.81[CHD][hapmap]
rs7660973	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695339	0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs876478	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links