Variant report

Variant	rs6838079
Chromosome Location	chr4:111027822-111027823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111027821..111029786-chr4:111115115..111116901,2	MCF-7	breast:
2	chr4:111026921..111029584-chr4:111032087..111034915,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11731449	0.83[ASN][1000 genomes]
rs12648757	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6533491	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111010000-111028000	Weak transcription	HepG2	liver
2	chr4:111011000-111040200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:111013000-111040400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:111013600-111040400	Weak transcription	Fetal Kidney	kidney
5	chr4:111020600-111028600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:111022000-111028000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:111023400-111029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:111023800-111037000	Weak transcription	Primary T cells from cord blood	blood
9	chr4:111024200-111049800	Weak transcription	Fetal Stomach	stomach
10	chr4:111025800-111028000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:111026200-111028400	Enhancers	Brain Germinal Matrix	brain
13	chr4:111026400-111037400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:111026400-111041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:111026400-111046000	Weak transcription	Left Ventricle	heart
16	chr4:111026400-111049200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:111026600-111028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:111026600-111034000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:111026600-111040000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:111026600-111040000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:111026600-111040000	Weak transcription	Dnd41	blood
22	chr4:111026800-111028200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:111027000-111028000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:111027000-111028600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:111027200-111028600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr4:111027200-111029600	Enhancers	Stomach Mucosa	stomach
27	chr4:111027200-111030200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:111027400-111028000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:111027400-111028000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:111027400-111028000	Enhancers	Placenta	Placenta
31	chr4:111027400-111028000	Enhancers	Gastric	stomach
32	chr4:111027400-111028000	Enhancers	HUVEC	blood vessel
33	chr4:111027400-111028200	Enhancers	Fetal Heart	heart
34	chr4:111027400-111028400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr4:111027400-111028600	Enhancers	HMEC	breast
36	chr4:111027400-111028600	Enhancers	NH-A	brain
37	chr4:111027400-111028800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr4:111027400-111031400	Enhancers	Osteobl	bone
39	chr4:111027600-111028000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr4:111027600-111028000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:111027600-111028000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:111027600-111028000	Enhancers	Brain Substantia Nigra	brain
43	chr4:111027600-111028000	Enhancers	Fetal Intestine Large	intestine
44	chr4:111027600-111028000	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr4:111027600-111028000	Enhancers	GM12878-XiMat	blood
46	chr4:111027600-111028200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:111027600-111028600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr4:111027600-111028600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:111027600-111028600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:111027600-111028600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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