Variant report

Variant	rs6838416
Chromosome Location	chr4:77378829-77378830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1511817	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4859445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4859676	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77370000-77380800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:77371200-77379200	Weak transcription	HSMMtube	muscle
3	chr4:77371400-77379200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:77371800-77379400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:77371800-77380200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:77376400-77379200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:77378200-77379200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:77378200-77379800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:77378400-77379200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:77378400-77379400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:77378400-77379600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:77378400-77380000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:77378400-77380000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:77378600-77379000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:77378600-77379000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:77378600-77379400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:77378600-77379800	Weak transcription	Liver	Liver
18	chr4:77378600-77380800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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