Variant report

Variant	rs6838732
Chromosome Location	chr4:150061802-150061803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1371006	1.00[AFR][1000 genomes]
rs6823955	1.00[AFR][1000 genomes]
rs6844096	1.00[AFR][1000 genomes]
rs7677102	1.00[AFR][1000 genomes]
rs7688092	1.00[AFR][1000 genomes]
rs7688222	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150058600-150066600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:150059200-150062400	Weak transcription	NHDF-Ad	bronchial
3	chr4:150060400-150063200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:150061000-150062600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:150061400-150062600	Enhancers	HSMM	muscle
6	chr4:150061800-150062800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links