Variant report

Variant	rs6838822
Chromosome Location	chr4:187741960-187741961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:187739285..187742127-chr4:187749398..187750937,2	K562	blood:
2	chr4:187680951..187683409-chr4:187740602..187742752,2	K562	blood:
3	chr4:187740833..187742405-chr4:187744512..187747261,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11942904	1.00[EUR][1000 genomes]
rs11946169	1.00[EUR][1000 genomes]
rs56754954	1.00[EUR][1000 genomes]
rs57633952	1.00[EUR][1000 genomes]
rs58836636	1.00[EUR][1000 genomes]
rs59277601	1.00[EUR][1000 genomes]
rs60274592	1.00[EUR][1000 genomes]
rs60940256	1.00[EUR][1000 genomes]
rs60958097	1.00[EUR][1000 genomes]
rs61037292	1.00[EUR][1000 genomes]
rs61548938	1.00[EUR][1000 genomes]
rs73873907	1.00[EUR][1000 genomes]
rs73873913	1.00[EUR][1000 genomes]
rs73876329	1.00[EUR][1000 genomes]
rs73876331	1.00[EUR][1000 genomes]
rs73876332	1.00[EUR][1000 genomes]
rs73876333	1.00[EUR][1000 genomes]
rs73876334	1.00[EUR][1000 genomes]
rs73876347	1.00[EUR][1000 genomes]
rs73876351	1.00[EUR][1000 genomes]
rs7686918	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1031603	chr4:187636716-188020741	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv880401	chr4:187668795-188047143	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv596441	chr4:187695564-187786316	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187740200-187742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:187740600-187742000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:187740600-187742200	Enhancers	NHEK	skin
4	chr4:187740600-187742400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:187740600-187742400	Enhancers	HUVEC	blood vessel
6	chr4:187740600-187742400	Enhancers	Osteobl	bone
7	chr4:187740600-187742600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:187740600-187742600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:187740600-187742600	Enhancers	Fetal Lung	lung
10	chr4:187740800-187742200	Enhancers	NHLF	lung
11	chr4:187740800-187742400	Enhancers	HSMM	muscle
12	chr4:187740800-187742600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:187740800-187742600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:187740800-187742600	Enhancers	Hela-S3	cervix
15	chr4:187740800-187742600	Enhancers	K562	blood
16	chr4:187740800-187742600	Enhancers	NHDF-Ad	bronchial
17	chr4:187741000-187742000	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:187741000-187742000	Enhancers	A549	lung
19	chr4:187741000-187742200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:187741000-187742200	Enhancers	Fetal Heart	heart
21	chr4:187741000-187742200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr4:187741000-187742600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:187741000-187742600	Enhancers	HSMMtube	muscle
24	chr4:187741400-187742000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:187741400-187742000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr4:187741400-187742000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr4:187741400-187742600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:187741400-187742600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:187741400-187742600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:187741400-187742600	Enhancers	Fetal Stomach	stomach
31	chr4:187741400-187743400	Enhancers	Fetal Muscle Trunk	muscle
32	chr4:187741600-187742000	Enhancers	Adipose Nuclei	Adipose
33	chr4:187741600-187742000	Enhancers	Colon Smooth Muscle	Colon
34	chr4:187741600-187742200	Enhancers	HMEC	breast
35	chr4:187741800-187742000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:187741800-187742000	Enhancers	HepG2	liver
37	chr4:187741800-187742200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:187741800-187745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:187741800-187751000	Weak transcription	Stomach Mucosa	stomach

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