Variant report

Variant	rs6839358
Chromosome Location	chr4:90999823-90999824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10016078	1.00[AMR][1000 genomes]
rs10022446	1.00[AMR][1000 genomes]
rs10516866	1.00[AMR][1000 genomes]
rs11931183	1.00[AMR][1000 genomes]
rs11932221	1.00[AMR][1000 genomes]
rs11933213	1.00[AMR][1000 genomes]
rs11936658	1.00[AMR][1000 genomes]
rs11940424	1.00[AMR][1000 genomes]
rs11940651	1.00[AMR][1000 genomes]
rs11941322	1.00[AMR][1000 genomes]
rs11941443	1.00[AMR][1000 genomes]
rs11943050	1.00[AMR][1000 genomes]
rs11943059	1.00[AMR][1000 genomes]
rs11945084	1.00[AMR][1000 genomes]
rs11945262	1.00[AMR][1000 genomes]
rs11945392	1.00[AMR][1000 genomes]
rs11946053	1.00[AMR][1000 genomes]
rs1431023	1.00[AMR][1000 genomes]
rs28870519	1.00[AMR][1000 genomes]
rs56719283	1.00[AMR][1000 genomes]
rs57759641	1.00[AMR][1000 genomes]
rs57853206	1.00[AMR][1000 genomes]
rs60438266	1.00[AMR][1000 genomes]
rs60591521	1.00[AMR][1000 genomes]
rs60654585	1.00[AMR][1000 genomes]
rs60666775	1.00[AMR][1000 genomes]
rs61529592	1.00[AMR][1000 genomes]
rs6821342	1.00[AMR][1000 genomes]
rs6821731	1.00[AMR][1000 genomes]
rs6822231	1.00[AMR][1000 genomes]
rs6828014	1.00[AMR][1000 genomes]
rs6828199	1.00[AMR][1000 genomes]
rs6832140	1.00[AMR][1000 genomes]
rs6848616	1.00[AMR][1000 genomes]
rs6853618	1.00[AMR][1000 genomes]
rs72872499	1.00[AMR][1000 genomes]
rs72874319	1.00[AMR][1000 genomes]
rs72877723	1.00[AMR][1000 genomes]
rs72877725	1.00[AMR][1000 genomes]
rs72877727	1.00[AMR][1000 genomes]
rs72877729	1.00[AMR][1000 genomes]
rs72877730	1.00[AMR][1000 genomes]
rs72877732	1.00[AMR][1000 genomes]
rs72877735	1.00[AMR][1000 genomes]
rs72877737	1.00[AMR][1000 genomes]
rs72877738	1.00[AMR][1000 genomes]
rs72877741	1.00[AMR][1000 genomes]
rs72877744	1.00[AMR][1000 genomes]
rs72877745	1.00[AMR][1000 genomes]
rs72877746	1.00[AMR][1000 genomes]
rs72877747	1.00[AMR][1000 genomes]
rs72877748	1.00[AMR][1000 genomes]
rs72877751	1.00[AMR][1000 genomes]
rs72877752	1.00[AMR][1000 genomes]
rs72877754	1.00[AMR][1000 genomes]
rs72877758	1.00[AMR][1000 genomes]
rs72877779	1.00[AMR][1000 genomes]
rs72877781	1.00[AMR][1000 genomes]
rs72877783	1.00[AMR][1000 genomes]
rs72877785	1.00[AMR][1000 genomes]
rs72877787	1.00[AMR][1000 genomes]
rs72877789	1.00[AMR][1000 genomes]
rs72877790	1.00[AMR][1000 genomes]
rs72877791	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv879537	chr4:90883047-91165346	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv830006	chr4:90971656-91186340	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv879538	chr4:90993172-91080308	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90996000-91002800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:90996000-91002800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:90998600-91000400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:90998800-91000400	Enhancers	NHEK	skin
5	chr4:90998800-91003000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:90999600-91000600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr4:90999800-91000200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:90999800-91000400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:90999800-91000400	Enhancers	GM12878-XiMat	blood
10	chr4:90999800-91000400	Enhancers	Hela-S3	cervix
11	chr4:90999800-91000800	Enhancers	Primary monocytes fromperipheralblood	blood

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