Variant report

Variant	rs6839601
Chromosome Location	chr4:15771611-15771612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15771423..15774001-chr4:15776022..15777670,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10002171	0.93[ASN][1000 genomes]
rs10002394	0.93[ASN][1000 genomes]
rs10013987	0.93[ASN][1000 genomes]
rs11930667	0.93[ASN][1000 genomes]
rs11939567	0.86[ASN][1000 genomes]
rs13116397	0.89[ASN][1000 genomes]
rs13116669	0.89[ASN][1000 genomes]
rs13120356	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13121175	0.93[ASN][1000 genomes]
rs13134405	0.91[ASN][1000 genomes]
rs16892396	0.93[ASN][1000 genomes]
rs16892407	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347605	0.93[ASN][1000 genomes]
rs34689171	0.92[ASN][1000 genomes]
rs35802132	0.93[ASN][1000 genomes]
rs4257648	0.84[ASN][1000 genomes]
rs4698417	0.86[ASN][1000 genomes]
rs68040828	0.93[ASN][1000 genomes]
rs6824164	0.93[ASN][1000 genomes]
rs6831585	0.87[ASN][1000 genomes]
rs6836946	0.86[EUR][1000 genomes]
rs6841880	0.86[EUR][1000 genomes]
rs6841924	0.91[ASN][1000 genomes]
rs7681005	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2760884	chr4:15759680-15776181	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15764800-15775800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:15767200-15779400	Weak transcription	Spleen	Spleen
3	chr4:15768200-15772400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:15768200-15775200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:15768200-15777200	Enhancers	Fetal Thymus	thymus
6	chr4:15768400-15772800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15768800-15773400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:15768800-15774800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:15769000-15772400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:15769000-15772400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:15769000-15772800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:15769000-15772800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:15769000-15773400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:15769200-15778600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:15769800-15772400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:15769800-15772400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:15769800-15773400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:15770000-15773000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:15770600-15772800	Genic enhancers	Dnd41	blood
20	chr4:15771000-15772600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:15771000-15772800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:15771200-15772400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:15771200-15772400	Weak transcription	Thymus	Thymus
24	chr4:15771200-15772600	Weak transcription	Primary T cells from cord blood	blood
25	chr4:15771200-15772800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr4:15771200-15773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:15771200-15773200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr4:15771200-15779400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr4:15771600-15772400	Enhancers	GM12878-XiMat	blood

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