Variant report

Variant	rs6840425
Chromosome Location	chr4:22385968-22385969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6857855	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22329000-22389400	Weak transcription	Pancreas	Pancrea
2	chr4:22365600-22386800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:22368800-22418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:22372000-22400400	Weak transcription	Gastric	stomach
6	chr4:22376400-22389200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:22377600-22389800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:22378600-22389200	Weak transcription	Aorta	Aorta
9	chr4:22381400-22390200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:22381600-22387800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:22382200-22386800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:22382400-22389200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:22382400-22389400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:22382600-22409600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:22383200-22388000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:22383200-22438000	Weak transcription	Lung	lung
17	chr4:22383400-22386600	Weak transcription	HMEC	breast
18	chr4:22383400-22388200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:22383400-22389400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:22383600-22389000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:22383600-22389600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:22383600-22404200	Weak transcription	Fetal Kidney	kidney
23	chr4:22383600-22442800	Weak transcription	A549	lung
24	chr4:22384000-22387600	Weak transcription	Fetal Lung	lung
25	chr4:22384200-22387200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:22384200-22387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:22384200-22389200	Weak transcription	Left Ventricle	heart
28	chr4:22384200-22389400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:22384200-22389400	Weak transcription	Adipose Nuclei	Adipose
30	chr4:22384200-22389400	Weak transcription	Right Ventricle	heart
31	chr4:22384200-22389600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:22384200-22400400	Weak transcription	Ovary	ovary
33	chr4:22384200-22401000	Weak transcription	Small Intestine	intestine
34	chr4:22384200-22413000	Weak transcription	Fetal Heart	heart
35	chr4:22384400-22389600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:22384600-22386000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:22384600-22386800	Weak transcription	HUVEC	blood vessel
38	chr4:22384600-22387000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:22384600-22387000	Weak transcription	Osteobl	bone
40	chr4:22384600-22387200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:22384600-22390800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:22384600-22392000	Weak transcription	Stomach Mucosa	stomach
43	chr4:22384600-22392400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:22384600-22393000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:22385000-22386800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:22385200-22386800	Weak transcription	Fetal Stomach	stomach
47	chr4:22385200-22386800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr4:22385200-22389400	Weak transcription	HepG2	liver
49	chr4:22385200-22389600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:22385200-22391000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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