Variant report

Variant	rs6842121
Chromosome Location	chr4:129618472-129618473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12509951	0.80[AMR][1000 genomes]
rs12512245	0.80[AMR][1000 genomes]
rs12641841	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648357	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35055939	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58623325	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842455	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129612000-129630400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:129618200-129618600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:129618200-129619200	Enhancers	Fetal Intestine Small	intestine
4	chr4:129618200-129619800	Enhancers	Fetal Intestine Large	intestine
5	chr4:129618400-129619800	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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