Variant report

Variant	rs684219
Chromosome Location	chr1:59032015-59032016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs232812	1.00[YRI][hapmap]
rs338235	1.00[YRI][hapmap]
rs556801	1.00[YRI][hapmap]
rs613810	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59031600-59032200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:59031600-59032600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:59031600-59035000	Enhancers	Psoas Muscle	Psoas
4	chr1:59031800-59032200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:59031800-59032200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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