Variant report

Variant	rs6842204
Chromosome Location	chr4:74757361-74757362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10020344	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10518118	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1429638	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4422395	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4694644	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4694649	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs625837	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74752000-74757400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:74752000-74757400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:74752000-74757400	Weak transcription	Osteobl	bone
4	chr4:74752000-74757600	Weak transcription	NHLF	lung
5	chr4:74752000-74760600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:74752200-74758000	Weak transcription	A549	lung
7	chr4:74756400-74758400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:74756800-74758200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:74756800-74758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:74756800-74759200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:74757000-74757600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:74757000-74757600	Enhancers	Spleen	Spleen
13	chr4:74757000-74758000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:74757000-74758800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:74757000-74759000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr4:74757000-74759000	Enhancers	Fetal Intestine Small	intestine
17	chr4:74757000-74760000	Enhancers	Fetal Intestine Large	intestine
18	chr4:74757200-74760000	Weak transcription	Fetal Kidney	kidney
19	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
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