Variant report

Variant	rs6842277
Chromosome Location	chr4:78712160-78712161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78708609..78711608-chr4:78711846..78715407,3	K562	blood:
2	chr4:78710108..78712213-chr4:78713271..78715270,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17409006	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655642	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78643800-78714000	Weak transcription	Lung	lung
2	chr4:78650200-78720000	Weak transcription	Spleen	Spleen
3	chr4:78694200-78722000	Weak transcription	Fetal Stomach	stomach
4	chr4:78696400-78717600	Weak transcription	Thymus	Thymus
5	chr4:78697200-78716400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:78697400-78721400	Weak transcription	Placenta	Placenta
7	chr4:78698000-78714000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:78698000-78714600	Weak transcription	Fetal Thymus	thymus
9	chr4:78698000-78716400	Weak transcription	Primary B cells from cord blood	blood
10	chr4:78698600-78714000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:78698600-78717400	Weak transcription	Right Ventricle	heart
12	chr4:78698600-78720200	Weak transcription	Dnd41	blood
13	chr4:78698800-78717400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:78699200-78716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:78699400-78714000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:78701600-78716600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:78701600-78721400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:78701800-78712400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr4:78703600-78718000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:78704800-78716600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:78704800-78716600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:78704800-78722200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:78705800-78720000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:78706000-78717600	Weak transcription	Right Atrium	heart
25	chr4:78706200-78719800	Weak transcription	Fetal Intestine Small	intestine
26	chr4:78707000-78716600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:78707400-78720200	Weak transcription	Gastric	stomach
28	chr4:78707600-78717800	Weak transcription	Esophagus	oesophagus
29	chr4:78708000-78716400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr4:78709000-78713200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:78709200-78721400	Weak transcription	Brain Substantia Nigra	brain
32	chr4:78710000-78715600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:78710200-78712800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr4:78710200-78722000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr4:78710400-78716000	Enhancers	Primary T cells from cord blood	blood
36	chr4:78710600-78716600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr4:78711000-78713600	Weak transcription	Left Ventricle	heart
38	chr4:78711000-78714000	Weak transcription	Pancreas	Pancrea
39	chr4:78711000-78714000	Weak transcription	Small Intestine	intestine
40	chr4:78711000-78717600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:78711000-78718000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:78711000-78722200	Weak transcription	Ovary	ovary
43	chr4:78711400-78712400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
44	chr4:78711400-78712800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:78711400-78716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:78711400-78722000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:78711600-78712200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:78711600-78721400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:78711600-78722200	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:78711800-78712600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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