Variant report

Variant	rs684230
Chromosome Location	chr3:150761349-150761350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1220997	1.00[CEU][hapmap]
rs1221004	1.00[CEU][hapmap]
rs62284837	1.00[ASN][1000 genomes]
rs62284841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150761000-150761600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:150761000-150761600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:150761000-150761800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:150761000-150762000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:150761200-150761400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:150761200-150761600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:150761200-150761600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:150761200-150761600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150761200-150761600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:150761200-150761600	Enhancers	Brain Hippocampus Middle	brain
11	chr3:150761200-150761800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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