Variant report

Variant	rs6842890
Chromosome Location	chr4:151209530-151209531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11099759	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101258	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4235252	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4696238	0.90[AFR][1000 genomes]
rs7679051	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898333	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv880257	chr4:151170387-151231371	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151191400-151245200	Weak transcription	Small Intestine	intestine
2	chr4:151192400-151232800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:151193600-151210200	Weak transcription	HepG2	liver
4	chr4:151202200-151210000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:151202200-151213200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:151202200-151218000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:151202400-151210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:151202600-151210600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:151202600-151213200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:151202800-151210000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:151202800-151223800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:151203600-151218400	Weak transcription	Fetal Stomach	stomach
13	chr4:151203800-151211000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:151203800-151244400	Weak transcription	Fetal Thymus	thymus
15	chr4:151204000-151211000	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:151204000-151223800	Weak transcription	K562	blood
17	chr4:151204000-151244600	Weak transcription	Lung	lung
18	chr4:151204200-151210600	Weak transcription	Liver	Liver
19	chr4:151204200-151213200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:151204600-151210400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr4:151204600-151210400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:151204600-151213200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:151204600-151213600	Weak transcription	Aorta	Aorta
24	chr4:151204600-151216800	Weak transcription	Pancreas	Pancrea
25	chr4:151204600-151236000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:151204600-151242200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:151204800-151209800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:151204800-151211000	Weak transcription	Fetal Intestine Small	intestine
29	chr4:151205000-151213200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:151205000-151236400	Weak transcription	Primary B cells from cord blood	blood
31	chr4:151205000-151272200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:151205400-151212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:151205800-151210600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:151206400-151213200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:151206600-151222800	Weak transcription	Osteobl	bone
36	chr4:151206800-151223800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:151206800-151223800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr4:151207200-151210400	Weak transcription	GM12878-XiMat	blood
39	chr4:151207200-151226600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:151207400-151210400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:151207600-151210200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:151207600-151241600	Weak transcription	Fetal Intestine Large	intestine
43	chr4:151208000-151230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr4:151208600-151230400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr4:151208800-151210400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:151209000-151211200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:151209000-151213200	Weak transcription	Primary T cells from cord blood	blood

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