Variant report

Variant	rs6843024
Chromosome Location	chr4:59416432-59416433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs190750	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2642165	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2642175	0.92[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2662838	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs282699	0.87[EUR][1000 genomes]
rs282701	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs282702	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs282703	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762438	chr4:58712109-59441414	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59414600-59418000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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