Variant report

Variant	rs6843474
Chromosome Location	chr4:62928415-62928416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1022139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11131354	0.94[ASN][1000 genomes]
rs11131355	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13124516	0.94[ASN][1000 genomes]
rs1477101	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1510920	0.91[ASN][1000 genomes]
rs2058764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7686098	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs993579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9991832	0.94[ASN][1000 genomes]
rs9995919	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62925000-62929000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:62925000-62939400	Weak transcription	Fetal Lung	lung
3	chr4:62925200-62929000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:62925400-62929800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:62925400-62936000	Weak transcription	Fetal Stomach	stomach
6	chr4:62925600-62929000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:62925600-62932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:62928200-62930000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:62928200-62930400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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