Variant report

Variant	rs6843643
Chromosome Location	chr4:120067589-120067590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120060909..120063531-chr4:120066181..120067927,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11098487	0.85[EUR][1000 genomes]
rs11098488	0.85[EUR][1000 genomes]
rs11721566	0.83[EUR][1000 genomes]
rs12501760	0.85[EUR][1000 genomes]
rs12501822	0.85[EUR][1000 genomes]
rs12509109	0.83[EUR][1000 genomes]
rs12509446	0.86[EUR][1000 genomes]
rs12513017	0.85[EUR][1000 genomes]
rs12650057	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12650315	0.83[EUR][1000 genomes]
rs13114076	0.81[EUR][1000 genomes]
rs13133956	0.83[EUR][1000 genomes]
rs13135433	0.85[EUR][1000 genomes]
rs13149133	0.85[EUR][1000 genomes]
rs1980029	0.86[EUR][1000 genomes]
rs4264818	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4267721	0.85[EUR][1000 genomes]
rs4391012	0.85[EUR][1000 genomes]
rs4833609	0.85[EUR][1000 genomes]
rs4834754	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4834756	0.85[EUR][1000 genomes]
rs4834757	0.85[EUR][1000 genomes]
rs57970878	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58422197	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62326337	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62326339	0.86[EUR][1000 genomes]
rs6820140	0.83[EUR][1000 genomes]
rs6820590	0.83[EUR][1000 genomes]
rs6820870	0.83[EUR][1000 genomes]
rs6828349	0.85[EUR][1000 genomes]
rs6828875	0.85[EUR][1000 genomes]
rs6829055	0.85[EUR][1000 genomes]
rs6829757	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834980	0.83[EUR][1000 genomes]
rs6836493	0.85[EUR][1000 genomes]
rs6841483	0.85[EUR][1000 genomes]
rs6843571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845494	0.82[EUR][1000 genomes]
rs6847481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856786	0.85[EUR][1000 genomes]
rs6857405	0.85[EUR][1000 genomes]
rs6857944	0.85[EUR][1000 genomes]
rs72910582	0.86[EUR][1000 genomes]
rs7655957	0.85[EUR][1000 genomes]
rs7658890	0.86[EUR][1000 genomes]
rs7669431	0.83[EUR][1000 genomes]
rs7681001	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
9	nsv1007619	chr4:120014898-120112460	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120057000-120068400	Active TSS	Right Atrium	heart
2	chr4:120059600-120076200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:120060000-120070400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:120060400-120070200	Weak transcription	Aorta	Aorta
5	chr4:120061200-120070200	Weak transcription	Psoas Muscle	Psoas
6	chr4:120061400-120083200	Weak transcription	HSMMtube	muscle
7	chr4:120061400-120089200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:120066400-120074200	Enhancers	Fetal Heart	heart
9	chr4:120066800-120070200	Weak transcription	Pancreas	Pancrea
10	chr4:120066800-120087000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:120067000-120070200	Weak transcription	Left Ventricle	heart
12	chr4:120067200-120067600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:120067200-120068000	Weak transcription	Right Ventricle	heart

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