Variant report

Variant	rs6845224
Chromosome Location	chr4:148534632-148534633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148520672..148522853-chr4:148532687..148534632,2	K562	blood:
2	chr4:148528379..148531648-chr4:148533404..148536404,5	MCF-7	breast:
3	chr4:148533195..148535601-chr4:148603840..148606780,2	K562	blood:
4	chr4:148531636..148535570-chr4:148536355..148539737,5	K562	blood:
5	chr4:148534491..148537230-chr4:148653257..148655916,2	MCF-7	breast:
6	chr4:148533282..148535358-chr4:148536772..148538526,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251298	Chromatin interaction
ENSG00000164169	Chromatin interaction
ENSG00000164168	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10015717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1005871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10305871	1.00[CEU][hapmap]
rs10519911	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11099668	0.81[ASN][1000 genomes]
rs12507247	0.89[ASN][1000 genomes]
rs12510847	0.81[ASN][1000 genomes]
rs12510915	0.80[ASN][1000 genomes]
rs13108782	0.88[ASN][1000 genomes]
rs17023732	0.82[CHB][hapmap]
rs17675572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2036498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2036500	0.97[ASN][1000 genomes]
rs2036501	0.91[ASN][1000 genomes]
rs2357926	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2358097	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2654937	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2654938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2654940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2654941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2654948	0.91[ASN][1000 genomes]
rs2654949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2718447	0.92[CHB][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs2718448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2718449	0.92[ASN][1000 genomes]
rs2718452	0.88[ASN][1000 genomes]
rs2718453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2718454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2718455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2718457	0.88[ASN][1000 genomes]
rs2718458	0.93[ASN][1000 genomes]
rs2884383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4379049	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4835439	0.85[ASN][1000 genomes]
rs4835440	0.85[ASN][1000 genomes]
rs4835441	0.85[ASN][1000 genomes]
rs4835445	0.87[ASN][1000 genomes]
rs57690385	0.91[ASN][1000 genomes]
rs60862021	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535552	0.88[ASN][1000 genomes]
rs6535553	0.87[ASN][1000 genomes]
rs6535554	0.87[ASN][1000 genomes]
rs6535555	0.82[ASN][1000 genomes]
rs6810521	0.82[ASN][1000 genomes]
rs6828566	0.81[ASN][1000 genomes]
rs6841745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6845592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655893	0.89[ASN][1000 genomes]
rs7660361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7664244	0.83[ASN][1000 genomes]
rs7666065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7672671	0.85[ASN][1000 genomes]
rs7675850	0.89[ASN][1000 genomes]
rs7678612	0.82[ASN][1000 genomes]
rs7687368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7690974	0.86[ASN][1000 genomes]
rs884761	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs905606	0.81[JPT][hapmap]
rs905607	0.80[ASN][1000 genomes]
rs924783	0.86[ASN][1000 genomes]
rs9998065	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2763396	chr4:148516769-148535636	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1019205	chr4:148524852-148576265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148519200-148538000	Weak transcription	Aorta	Aorta
2	chr4:148521400-148538000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:148527000-148537600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:148527200-148538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:148529600-148537600	Weak transcription	HepG2	liver
6	chr4:148532600-148537600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:148532800-148538000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:148534000-148537600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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