Variant report

Variant	rs6846192
Chromosome Location	chr4:79894265-79894266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1351418	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1564462	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17003468	1.00[MEX][hapmap]
rs1871707	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs286475	0.89[AMR][1000 genomes]
rs286481	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28780400	0.87[AFR][1000 genomes]
rs3925534	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6534103	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6827713	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6855861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695373	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs899901	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79892000-79894400	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr4:79892400-79894400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:79892400-79894600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:79892400-79894800	Active TSS	Aorta	Aorta
5	chr4:79892600-79894600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:79892800-79894400	Active TSS	Brain Anterior Caudate	brain
7	chr4:79892800-79894400	Active TSS	Brain Hippocampus Middle	brain
8	chr4:79892800-79895800	Active TSS	Brain Substantia Nigra	brain
9	chr4:79892800-79896200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:79894000-79895600	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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