Variant report

Variant	rs6846235
Chromosome Location	chr4:7870171-7870172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7870109..7872064-chr4:7879515..7881205,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28422989	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533862	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653117	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701532	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891925	1.00[ASN][1000 genomes]
rs4358402	0.83[EUR][1000 genomes]
rs60118949	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088575	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7848000-7872200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:7852600-7873600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:7856200-7872800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:7857600-7873000	Weak transcription	Colonic Mucosa	Colon
5	chr4:7857800-7896400	Weak transcription	Spleen	Spleen
6	chr4:7859800-7872600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:7860400-7870200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:7860800-7872800	Weak transcription	Right Ventricle	heart
9	chr4:7861200-7872800	Weak transcription	Psoas Muscle	Psoas
10	chr4:7863600-7871000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:7863800-7872800	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:7864800-7873000	Weak transcription	Primary T cells from cord blood	blood
13	chr4:7865200-7872200	Weak transcription	Right Atrium	heart
14	chr4:7865400-7872600	Weak transcription	Fetal Heart	heart
15	chr4:7865400-7875800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:7865800-7871400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:7865800-7872000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:7865800-7872800	Strong transcription	Fetal Stomach	stomach
19	chr4:7866000-7870800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:7866000-7872000	Weak transcription	Gastric	stomach
21	chr4:7866000-7872600	Weak transcription	Fetal Brain Male	brain
22	chr4:7866000-7872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:7866000-7872800	Weak transcription	Brain Angular Gyrus	brain
24	chr4:7866000-7872800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:7866000-7872800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:7866000-7872800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:7866000-7872800	Weak transcription	Brain Substantia Nigra	brain
28	chr4:7866000-7873000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:7866000-7873000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:7866000-7873000	Weak transcription	Pancreas	Pancrea
31	chr4:7866000-7874000	Weak transcription	Fetal Kidney	kidney
32	chr4:7866000-7875200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:7866000-7875400	Weak transcription	Stomach Mucosa	stomach
34	chr4:7866000-7877600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:7866000-7877800	Weak transcription	HepG2	liver
36	chr4:7866000-7882400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:7866000-7885600	Weak transcription	Esophagus	oesophagus
38	chr4:7866800-7873600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:7867000-7870200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:7867200-7870400	Strong transcription	Fetal Lung	lung
41	chr4:7867200-7870600	Strong transcription	Fetal Intestine Large	intestine
42	chr4:7867200-7871800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr4:7867200-7872800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:7867200-7873600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:7867400-7873000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:7867400-7873000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:7867400-7873000	Strong transcription	Fetal Intestine Small	intestine
48	chr4:7868000-7870200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr4:7868200-7871000	Genic enhancers	Osteobl	bone
50	chr4:7868400-7870400	Strong transcription	Brain Germinal Matrix	brain

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