Variant report

Variant	rs6847099
Chromosome Location	chr4:77422785-77422786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12651059	1.00[AFR][1000 genomes]
rs13152154	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs1912831	1.00[AFR][1000 genomes]
rs57946251	0.81[AMR][1000 genomes]
rs6532416	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs963509	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757069	chr4:77392092-77455405	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77416400-77432800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:77420200-77433400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:77420200-77435000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:77420200-77435200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:77420400-77433200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:77420400-77455800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:77421000-77423600	Weak transcription	Fetal Lung	lung
8	chr4:77421600-77423200	Weak transcription	Liver	Liver
9	chr4:77422000-77422800	Enhancers	Fetal Heart	heart
10	chr4:77422600-77423800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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