Variant report

Variant	rs6847152
Chromosome Location	chr4:152965975-152965976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12054605	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17028407	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17028413	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1991225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62318960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62318961	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62321495	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62321516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6844610	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7682518	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7682524	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152960600-152966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:152961000-152966600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:152961400-152966600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:152961400-152967200	Weak transcription	Aorta	Aorta
5	chr4:152962400-152966600	Weak transcription	Fetal Heart	heart
6	chr4:152963000-152966200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:152964800-152966600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:152965200-152966800	Enhancers	Fetal Thymus	thymus
9	chr4:152965400-152966600	Enhancers	Thymus	Thymus
10	chr4:152965400-152966800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:152965600-152966600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:152965800-152966000	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr4:152965800-152966600	Weak transcription	Hela-S3	cervix
14	chr4:152965800-152966800	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:152965800-152966800	Bivalent Enhancer	HepG2	liver
16	chr4:152965800-152967200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:152965800-152967400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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