Variant report

Variant	rs6847415
Chromosome Location	chr4:56518887-56518888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56517086..56520350-chr4:56522100..56524911,3	K562	blood:
2	chr4:56515936..56519934-chr4:56522100..56525314,4	K562	blood:
3	chr4:56517756..56519698-chr4:56525326..56526892,2	K562	blood:
4	chr4:56512523..56514282-chr4:56518613..56521303,2	K562	blood:
5	chr4:56512381..56514282-chr4:56518613..56520259,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10031586	1.00[EUR][1000 genomes]
rs1488940	1.00[EUR][1000 genomes]
rs1533803	1.00[EUR][1000 genomes]
rs1554482	1.00[EUR][1000 genomes]
rs17085739	1.00[EUR][1000 genomes]
rs17085769	1.00[EUR][1000 genomes]
rs17085780	1.00[EUR][1000 genomes]
rs17085821	1.00[EUR][1000 genomes]
rs2130039	1.00[EUR][1000 genomes]
rs2140076	1.00[EUR][1000 genomes]
rs2412660	1.00[EUR][1000 genomes]
rs57219525	1.00[EUR][1000 genomes]
rs57848550	1.00[EUR][1000 genomes]
rs58395965	1.00[EUR][1000 genomes]
rs6855837	1.00[EUR][1000 genomes]
rs73151889	1.00[EUR][1000 genomes]
rs73153687	1.00[EUR][1000 genomes]
rs73817206	1.00[EUR][1000 genomes]
rs73819624	1.00[EUR][1000 genomes]
rs73819626	1.00[EUR][1000 genomes]
rs73819631	1.00[EUR][1000 genomes]
rs73819633	1.00[EUR][1000 genomes]
rs73819635	1.00[EUR][1000 genomes]
rs73819642	1.00[EUR][1000 genomes]
rs73819647	1.00[EUR][1000 genomes]
rs7655255	1.00[EUR][1000 genomes]
rs7693751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1006944	chr4:56512574-56580169	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56515400-56541400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:56518400-56519400	Weak transcription	K562	blood

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