Variant report

Variant	rs6847575
Chromosome Location	chr4:91773537-91773538
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11940698	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17017704	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17017717	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17017726	1.00[CEU][hapmap]
rs1902034	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4529014	1.00[CEU][hapmap]
rs59275904	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59340785	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73833898	0.93[EUR][1000 genomes]
rs73833899	0.93[EUR][1000 genomes]
rs73834566	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73834567	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7438231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea
2	chr4:91773400-91773600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:91773400-91773800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:91773400-91773800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:91773400-91773800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:91773400-91773800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:91773400-91773800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:91773400-91774000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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