Variant report

Variant	rs6848630
Chromosome Location	chr4:91289474-91289475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10000742	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1000522	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026538	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452166	1.00[JPT][hapmap]
rs10516870	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516871	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097248	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097249	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931167	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943289	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642565	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381352	1.00[ASN][1000 genomes]
rs1381353	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461736	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016970	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016974	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841623	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1903576	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1903577	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973145	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973146	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2169398	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28433487	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28472641	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28476593	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28545715	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2870247	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58105555	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62312911	0.99[ASN][1000 genomes]
rs62312912	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824866	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842950	0.98[AFR][1000 genomes]
rs6848509	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849224	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851151	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72883342	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7434494	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7442095	0.82[EUR][1000 genomes]
rs7656195	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7656237	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696477	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9307083	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307084	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9884875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996798	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998809	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2763804	chr4:91261413-91291516	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1006975	chr4:91268174-91298909	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv1831446	chr4:91283134-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv1827765	chr4:91283146-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1829133	chr4:91286902-91292403	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1825166	chr4:91287152-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv1832048	chr4:91287152-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv1833414	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv2421773	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
15	nsv441898	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
16	nsv435791	chr4:91287164-91292304	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1825632	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
18	esv1826538	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv1827041	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv1827850	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv1828340	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv1826092	chr4:91287204-91297436	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv1826169	chr4:91287204-91297436	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	esv1827360	chr4:91287271-91292403	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
26	esv20790	chr4:91287888-91292489	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
27	esv1829535	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
28	esv1831475	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
29	esv1833492	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv1825082	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv1825483	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
32	esv1827637	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
33	nsv594823	chr4:91289294-91291271	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
34	nsv594824	chr4:91289294-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1826149	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
36	esv1826446	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
37	esv1826650	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
38	esv1828725	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
39	esv1833117	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
40	nsv594825	chr4:91289294-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
41	nsv594826	chr4:91289294-91296454	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
42	esv1830822	chr4:91289294-91297436	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
43	esv1831826	chr4:91289294-91297436	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
44	nsv594827	chr4:91289449-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
45	nsv594828	chr4:91289469-91291433	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91289200-91291800	Weak transcription	Fetal Intestine Small	intestine

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