Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57734226..57738825-chr4:57772545..57776428,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10003229	0.84[AMR][1000 genomes]
rs1612191	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1622434	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1623306	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2412760	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2412770	0.84[AMR][1000 genomes]
rs2458552	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28605409	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28625367	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3106530	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58228066	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6839385	0.83[EUR][1000 genomes]
rs7667084	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7675979	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs781545	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs781551	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs781553	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs781554	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs781556	0.89[AMR][1000 genomes]
rs781667	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822561	chr4:57736121-57747867	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57727800-57737600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:57727800-57740600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:57736000-57736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: