Variant report

Variant	rs6850004
Chromosome Location	chr4:86051102-86051103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11729044	0.88[ASN][1000 genomes]
rs11730800	0.81[ASN][1000 genomes]
rs11733099	0.82[ASN][1000 genomes]
rs2869277	0.82[EUR][1000 genomes]
rs5016524	0.82[ASN][1000 genomes]
rs56094513	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60956803	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61192408	0.82[EUR][1000 genomes]
rs6531790	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv427685	chr4:86032872-86340548	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86048000-86051400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:86048400-86051400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:86049000-86051600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:86050000-86051400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:86050000-86056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:86050200-86051200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr4:86050400-86051200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:86050400-86051600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:86050400-86051800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:86050600-86051400	Enhancers	Colonic Mucosa	Colon
11	chr4:86050600-86051400	Enhancers	Duodenum Mucosa	Duodenum
12	chr4:86050600-86051400	Enhancers	Placenta	Placenta
13	chr4:86050600-86051600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:86050800-86051400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:86050800-86051400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:86050800-86051600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:86051000-86051200	Enhancers	Primary B cells from peripheral blood	blood
18	chr4:86051000-86051200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:86051000-86051600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links