Variant report

Variant	rs6850242
Chromosome Location	chr4:175322711-175322712
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175321832..175326435-chr4:175326586..175330310,4	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11725800	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11727574	0.82[ASN][1000 genomes]
rs11732586	0.82[ASN][1000 genomes]
rs11735455	0.82[ASN][1000 genomes]
rs13101376	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13102962	0.82[ASN][1000 genomes]
rs13107351	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13108930	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13109756	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13120534	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13122946	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13126536	0.81[AMR][1000 genomes]
rs13132617	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13140627	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13145787	0.81[AMR][1000 genomes]
rs13146439	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13149810	0.83[ASN][1000 genomes]
rs13150656	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1922383	0.82[ASN][1000 genomes]
rs1922384	0.81[ASN][1000 genomes]
rs28519075	0.82[ASN][1000 genomes]
rs28657489	0.81[ASN][1000 genomes]
rs34037587	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34054930	0.81[ASN][1000 genomes]
rs34135350	0.81[ASN][1000 genomes]
rs34175211	0.81[ASN][1000 genomes]
rs34400328	0.80[ASN][1000 genomes]
rs34421418	0.80[ASN][1000 genomes]
rs34425026	0.80[ASN][1000 genomes]
rs34572193	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34592304	0.81[ASN][1000 genomes]
rs34604934	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34795808	0.82[ASN][1000 genomes]
rs34833822	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35078417	0.82[ASN][1000 genomes]
rs35211627	0.80[ASN][1000 genomes]
rs35263478	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35295528	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35347093	0.82[ASN][1000 genomes]
rs35423027	0.81[ASN][1000 genomes]
rs35539859	0.82[ASN][1000 genomes]
rs35635103	0.80[ASN][1000 genomes]
rs35663303	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35760448	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35920928	0.81[ASN][1000 genomes]
rs35978128	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36122870	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4131102	0.81[ASN][1000 genomes]
rs4273447	0.82[ASN][1000 genomes]
rs4568217	0.82[ASN][1000 genomes]
rs62335857	0.80[ASN][1000 genomes]
rs62337061	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62337062	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62337063	0.82[ASN][1000 genomes]
rs62337086	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62337087	0.83[ASN][1000 genomes]
rs6553785	0.80[ASN][1000 genomes]
rs6553786	0.80[ASN][1000 genomes]
rs6553789	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6553790	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6553791	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67728476	0.82[ASN][1000 genomes]
rs6827853	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6833315	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6835446	0.80[ASN][1000 genomes]
rs6852435	0.80[ASN][1000 genomes]
rs6853004	0.82[ASN][1000 genomes]
rs6853166	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6853181	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7654427	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7655606	0.82[ASN][1000 genomes]
rs7656628	0.80[ASN][1000 genomes]
rs7665426	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7665708	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7667325	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7667374	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7667642	0.82[ASN][1000 genomes]
rs7671492	0.80[ASN][1000 genomes]
rs7672838	0.82[ASN][1000 genomes]
rs7680564	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7687802	0.82[ASN][1000 genomes]
rs7688229	0.84[ASN][1000 genomes]
rs7689422	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7689484	0.81[ASN][1000 genomes]
rs7691061	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7695912	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv3352016	chr4:175304977-175322711	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175318600-175322800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:175319200-175323200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:175320000-175324000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:175320400-175323600	Weak transcription	Stomach Mucosa	stomach
5	chr4:175320400-175323800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:175320600-175323400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:175320800-175323600	Weak transcription	Esophagus	oesophagus
8	chr4:175321000-175322800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:175321200-175323000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:175321400-175323400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:175321400-175324000	Enhancers	Hela-S3	cervix
12	chr4:175321400-175325600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:175321400-175325800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:175321400-175326000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:175321400-175326000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:175321600-175323400	Enhancers	NHEK	skin
17	chr4:175321600-175326000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:175321600-175329800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:175321800-175325800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:175322000-175323200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:175322000-175324200	Enhancers	K562	blood
22	chr4:175322200-175323000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:175322200-175323000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:175322200-175324800	Enhancers	Placenta	Placenta
25	chr4:175322400-175322800	Active TSS	A549	lung
26	chr4:175322400-175323200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:175322600-175323800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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